Bayesian Networks

Author: Marco Scutari
Publisher: CRC Press
ISBN: 1482225581
Format: PDF, Kindle
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Understand the Foundations of Bayesian Networks—Core Properties and Definitions Explained Bayesian Networks: With Examples in R introduces Bayesian networks using a hands-on approach. Simple yet meaningful examples in R illustrate each step of the modeling process. The examples start from the simplest notions and gradually increase in complexity. The authors also distinguish the probabilistic models from their estimation with data sets. The first three chapters explain the whole process of Bayesian network modeling, from structure learning to parameter learning to inference. These chapters cover discrete Bayesian, Gaussian Bayesian, and hybrid networks, including arbitrary random variables. The book then gives a concise but rigorous treatment of the fundamentals of Bayesian networks and offers an introduction to causal Bayesian networks. It also presents an overview of R and other software packages appropriate for Bayesian networks. The final chapter evaluates two real-world examples: a landmark causal protein signaling network paper and graphical modeling approaches for predicting the composition of different body parts. Suitable for graduate students and non-statisticians, this text provides an introductory overview of Bayesian networks. It gives readers a clear, practical understanding of the general approach and steps involved.

Statistical Rethinking

Author: Richard McElreath
Publisher: CRC Press
ISBN: 1482253461
Format: PDF, ePub
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Statistical Rethinking: A Bayesian Course with Examples in R and Stan builds readers’ knowledge of and confidence in statistical modeling. Reflecting the need for even minor programming in today’s model-based statistics, the book pushes readers to perform step-by-step calculations that are usually automated. This unique computational approach ensures that readers understand enough of the details to make reasonable choices and interpretations in their own modeling work. The text presents generalized linear multilevel models from a Bayesian perspective, relying on a simple logical interpretation of Bayesian probability and maximum entropy. It covers from the basics of regression to multilevel models. The author also discusses measurement error, missing data, and Gaussian process models for spatial and network autocorrelation. By using complete R code examples throughout, this book provides a practical foundation for performing statistical inference. Designed for both PhD students and seasoned professionals in the natural and social sciences, it prepares them for more advanced or specialized statistical modeling. Web Resource The book is accompanied by an R package (rethinking) that is available on the author’s website and GitHub. The two core functions (map and map2stan) of this package allow a variety of statistical models to be constructed from standard model formulas.

Bayesian Networks in R

Author: Radhakrishnan Nagarajan
Publisher: Springer Science & Business Media
ISBN: 1461464463
Format: PDF, ePub, Docs
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Bayesian Networks in R with Applications in Systems Biology is unique as it introduces the reader to the essential concepts in Bayesian network modeling and inference in conjunction with examples in the open-source statistical environment R. The level of sophistication is also gradually increased across the chapters with exercises and solutions for enhanced understanding for hands-on experimentation of the theory and concepts. The application focuses on systems biology with emphasis on modeling pathways and signaling mechanisms from high-throughput molecular data. Bayesian networks have proven to be especially useful abstractions in this regard. Their usefulness is especially exemplified by their ability to discover new associations in addition to validating known ones across the molecules of interest. It is also expected that the prevalence of publicly available high-throughput biological data sets may encourage the audience to explore investigating novel paradigms using the approaches presented in the book.

Risk Assessment and Decision Analysis with Bayesian Networks

Author: Norman Fenton
Publisher: CRC Press
ISBN: 1439809119
Format: PDF, ePub, Docs
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Although many Bayesian Network (BN) applications are now in everyday use, BNs have not yet achieved mainstream penetration. Focusing on practical real-world problem solving and model building, as opposed to algorithms and theory, Risk Assessment and Decision Analysis with Bayesian Networks explains how to incorporate knowledge with data to develop and use (Bayesian) causal models of risk that provide powerful insights and better decision making. Provides all tools necessary to build and run realistic Bayesian network models Supplies extensive example models based on real risk assessment problems in a wide range of application domains provided; for example, finance, safety, systems reliability, law, and more Introduces all necessary mathematics, probability, and statistics as needed The book first establishes the basics of probability, risk, and building and using BN models, then goes into the detailed applications. The underlying BN algorithms appear in appendices rather than the main text since there is no need to understand them to build and use BN models. Keeping the body of the text free of intimidating mathematics, the book provides pragmatic advice about model building to ensure models are built efficiently. A dedicated website, www.BayesianRisk.com, contains executable versions of all of the models described, exercises and worked solutions for all chapters, PowerPoint slides, numerous other resources, and a free downloadable copy of the AgenaRisk software.

Graphical Models with R

Author: Søren Højsgaard
Publisher: Springer Science & Business Media
ISBN: 146142299X
Format: PDF, Mobi
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Graphical models in their modern form have been around since the late 1970s and appear today in many areas of the sciences. Along with the ongoing developments of graphical models, a number of different graphical modeling software programs have been written over the years. In recent years many of these software developments have taken place within the R community, either in the form of new packages or by providing an R interface to existing software. This book attempts to give the reader a gentle introduction to graphical modeling using R and the main features of some of these packages. In addition, the book provides examples of how more advanced aspects of graphical modeling can be represented and handled within R. Topics covered in the seven chapters include graphical models for contingency tables, Gaussian and mixed graphical models, Bayesian networks and modeling high dimensional data.

Bayesian Networks and Decision Graphs

Author: Thomas Dyhre Nielsen
Publisher: Springer Science & Business Media
ISBN: 9780387682815
Format: PDF, Kindle
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This is a brand new edition of an essential work on Bayesian networks and decision graphs. It is an introduction to probabilistic graphical models including Bayesian networks and influence diagrams. The reader is guided through the two types of frameworks with examples and exercises, which also give instruction on how to build these models. Structured in two parts, the first section focuses on probabilistic graphical models, while the second part deals with decision graphs, and in addition to the frameworks described in the previous edition, it also introduces Markov decision process and partially ordered decision problems.

Bayesian Networks and Influence Diagrams A Guide to Construction and Analysis

Author: Uffe B. Kjærulff
Publisher: Springer Science & Business Media
ISBN: 1461451043
Format: PDF, ePub, Mobi
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Bayesian Networks and Influence Diagrams: A Guide to Construction and Analysis, Second Edition, provides a comprehensive guide for practitioners who wish to understand, construct, and analyze intelligent systems for decision support based on probabilistic networks. This new edition contains six new sections, in addition to fully-updated examples, tables, figures, and a revised appendix. Intended primarily for practitioners, this book does not require sophisticated mathematical skills or deep understanding of the underlying theory and methods nor does it discuss alternative technologies for reasoning under uncertainty. The theory and methods presented are illustrated through more than 140 examples, and exercises are included for the reader to check his or her level of understanding. The techniques and methods presented for knowledge elicitation, model construction and verification, modeling techniques and tricks, learning models from data, and analyses of models have all been developed and refined on the basis of numerous courses that the authors have held for practitioners worldwide.

Probabilistic Networks and Expert Systems

Author: Robert G. Cowell
Publisher: Springer Science & Business Media
ISBN: 9780387718231
Format: PDF, Mobi
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Winner of the 2002 DeGroot Prize. Probabilistic expert systems are graphical networks that support the modelling of uncertainty and decisions in large complex domains, while retaining ease of calculation. Building on original research by the authors over a number of years, this book gives a thorough and rigorous mathematical treatment of the underlying ideas, structures, and algorithms, emphasizing those cases in which exact answers are obtainable. It covers both the updating of probabilistic uncertainty in the light of new evidence, and statistical inference, about unknown probabilities or unknown model structure, in the light of new data. The careful attention to detail will make this work an important reference source for all those involved in the theory and applications of probabilistic expert systems. This book was awarded the first DeGroot Prize by the International Society for Bayesian Analysis for a book making an important, timely, thorough, and notably original contribution to the statistics literature. Robert G. Cowell is a Lecturer in the Faculty of Actuarial Science and Insurance of the Sir John Cass Business School, City of London. He has been working on probabilistic expert systems since 1989. A. Philip Dawid is Professor of Statistics at Cambridge University. He has served as Editor of the Journal of the Royal Statistical Society (Series B), Biometrika and Bayesian Analysis, and as President of the International Society for Bayesian Analysis. He holds the Royal Statistical Society Guy Medal in Bronze and in Silver, and the Snedecor Award for the Best Publication in Biometry. Steffen L. Lauritzen is Professor of Statistics at the University of Oxford. He has served as Editor of the Scandinavian Journal of Statistics. He holds the Royal Statistical Society Guy Medal in Silver and is an Honorary Fellow of the same society. He has, jointly with David J. Spiegelhalter, received the American Statistical Association’s award for an "Outstanding Statistical Application." David J. Spiegelhalter is Winton Professor of the Public Understanding of Risk at Cambridge University and Senior Scientist in the MRC Biostatistics Unit, Cambridge. He has published extensively on Bayesian methodology and applications, and holds the Royal Statistical Society Guy Medal in Bronze and in Silver.

Learning Bayesian Networks

Author: Richard E. Neapolitan
Publisher: Prentice Hall
ISBN:
Format: PDF, Mobi
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For courses in Bayesian Networks or Advanced Networking focusing on Bayesian networks found in departments of Computer Science, Computer Engineering and Electrical Engineering. Also appropriate as a supplementary text in courses on Expert Systems, Machine Learning, and Artificial Intelligence where the topic of Bayesian Networks is covered. This book provides an accessible and unified discussion of Bayesian networks. It includes discussions of topics related to the areas of artificial intelligence, expert systems and decision analysis, the fields in which Bayesian networks are frequently applied. The author discusses both methods for doing inference in Bayesian networks and influence diagrams. The book also covers the Bayesian method for learning the values of discrete and continuous parameters. Both the Bayesian and constraint-based methods for learning structure are discussed in detail.

Bayesian Artificial Intelligence Second Edition

Author: Kevin B. Korb
Publisher: CRC Press
ISBN: 1439815925
Format: PDF, ePub, Docs
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Updated and expanded, Bayesian Artificial Intelligence, Second Edition provides a practical and accessible introduction to the main concepts, foundation, and applications of Bayesian networks. It focuses on both the causal discovery of networks and Bayesian inference procedures. Adopting a causal interpretation of Bayesian networks, the authors discuss the use of Bayesian networks for causal modeling. They also draw on their own applied research to illustrate various applications of the technology. New to the Second Edition New chapter on Bayesian network classifiers New section on object-oriented Bayesian networks New section that addresses foundational problems with causal discovery and Markov blanket discovery New section that covers methods of evaluating causal discovery programs Discussions of many common modeling errors New applications and case studies More coverage on the uses of causal interventions to understand and reason with causal Bayesian networks Illustrated with real case studies, the second edition of this bestseller continues to cover the groundwork of Bayesian networks. It presents the elements of Bayesian network technology, automated causal discovery, and learning probabilities from data and shows how to employ these technologies to develop probabilistic expert systems. Web Resource The book’s website at www.csse.monash.edu.au/bai/book/book.html offers a variety of supplemental materials, including example Bayesian networks and data sets. Instructors can email the authors for sample solutions to many of the problems in the text.